Panacagrimonas perspica gen. nov., sp. nov., a novel member of Gammaproteobacteria isolated from soil of a ginseng field

Wan Taek Im; Qing Mei Liu; Jung Eun Yang; Min Seok Kim; Se Young Kim; Sung Taik Lee; Tae Hoo Yi

doi:10.1007/s12275-010-0067-0

Panacagrimonas perspica gen. nov., sp. nov., a novel member of Gammaproteobacteria isolated from soil of a ginseng field

Wan Taek Im, Qing Mei Liu, Jung Eun Yang, Min Seok Kim, Se Young Kim, Sung Taik Lee, Tae Hoo Yi

Department of New Biology

Research output: Contribution to journal › Article › peer-review

25 Scopus citations

Abstract

A taxonomic study was carried out on Gsoil 142^T, a bacterial strain isolated from the soil collected in a ginseng field in Pocheon province, South Korea. Comparative 16S rRNA gene sequence studies showed a clear affiliation of this bacterium to the Gammaproteobacteria, and it was most closely related to Hydrocarboniphaga effusa ATCC BAA 332^T (94. 4%, 16S rRNA gene sequence similarity), Nevskia ramosa DSM 11499^T (94. 1%) and Alkanibacter difficilis MN154. 3^T (92. 0%). Strain Gsoil 142^T was a Gram-negative, strictly aerobic, motile, and rod-shaped bacterium. The G+C content of the genomic DNA was 69. 9% and predominant ubiquinone was Q-8. Major fatty acids were summed feature 8 (C_18:1ω7c and/or ω6c, 36. 3%), summed feature 3 (iso-C_15:0 2-OH and/or C_16:1ω7c, 20. 6%) and C_16:0 (17. 4%). The major polar lipids detected in strain Gsoil 142^T were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unknown glycolipid. On the basis of polyphasic evidence, it is proposed that strain Gsoil 142^T should be placed in a novel genus and species, for which the name Panacagrimonas perspica gen. nov., sp. nov. is proposed. The type strain is Gsoil 142^T (= KCTC 12982^T = LMG 23239^T).

Original language	English
Pages (from-to)	262-266
Number of pages	5
Journal	Journal of Microbiology
Volume	48
Issue number	2
DOIs	https://doi.org/10.1007/s12275-010-0067-0
State	Published - Apr 2010

Bibliographical note

Funding Information:
This work was supported by the 21C Frontier Microbial Genomics and Applications Center Program, Ministry of Education, Science & Technology (Grant MG08-0101-2-0) and by Technology Development Program for Fisheries, Ministry for Food, Agriculture, Forestry and Fisheries, and grant from the Kyung Hee University in 2010 (20100177), Republic of Korea. We thank Jean Euzéby for his help with the etymology of the species epithet.

Keywords

16S rRNA gene
Panacagrimonas perspica gen. nov., sp. nov
Polyphasic taxonomy

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title = "Panacagrimonas perspica gen. nov., sp. nov., a novel member of Gammaproteobacteria isolated from soil of a ginseng field",

abstract = "A taxonomic study was carried out on Gsoil 142T, a bacterial strain isolated from the soil collected in a ginseng field in Pocheon province, South Korea. Comparative 16S rRNA gene sequence studies showed a clear affiliation of this bacterium to the Gammaproteobacteria, and it was most closely related to Hydrocarboniphaga effusa ATCC BAA 332T (94. 4%, 16S rRNA gene sequence similarity), Nevskia ramosa DSM 11499T (94. 1%) and Alkanibacter difficilis MN154. 3T (92. 0%). Strain Gsoil 142T was a Gram-negative, strictly aerobic, motile, and rod-shaped bacterium. The G+C content of the genomic DNA was 69. 9% and predominant ubiquinone was Q-8. Major fatty acids were summed feature 8 (C18:1ω7c and/or ω6c, 36. 3%), summed feature 3 (iso-C15:0 2-OH and/or C16:1ω7c, 20. 6%) and C16:0 (17. 4%). The major polar lipids detected in strain Gsoil 142T were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unknown glycolipid. On the basis of polyphasic evidence, it is proposed that strain Gsoil 142T should be placed in a novel genus and species, for which the name Panacagrimonas perspica gen. nov., sp. nov. is proposed. The type strain is Gsoil 142T (= KCTC 12982T = LMG 23239T).",

keywords = "16S rRNA gene, Panacagrimonas perspica gen. nov., sp. nov, Polyphasic taxonomy",

author = "Im, {Wan Taek} and Liu, {Qing Mei} and Yang, {Jung Eun} and Kim, {Min Seok} and Kim, {Se Young} and Lee, {Sung Taik} and Yi, {Tae Hoo}",

note = "Funding Information: This work was supported by the 21C Frontier Microbial Genomics and Applications Center Program, Ministry of Education, Science & Technology (Grant MG08-0101-2-0) and by Technology Development Program for Fisheries, Ministry for Food, Agriculture, Forestry and Fisheries, and grant from the Kyung Hee University in 2010 (20100177), Republic of Korea. We thank Jean Euz{\'e}by for his help with the etymology of the species epithet.",

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doi = "10.1007/s12275-010-0067-0",

language = "English",

volume = "48",

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AU - Kim, Se Young

AU - Lee, Sung Taik

AU - Yi, Tae Hoo

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N2 - A taxonomic study was carried out on Gsoil 142T, a bacterial strain isolated from the soil collected in a ginseng field in Pocheon province, South Korea. Comparative 16S rRNA gene sequence studies showed a clear affiliation of this bacterium to the Gammaproteobacteria, and it was most closely related to Hydrocarboniphaga effusa ATCC BAA 332T (94. 4%, 16S rRNA gene sequence similarity), Nevskia ramosa DSM 11499T (94. 1%) and Alkanibacter difficilis MN154. 3T (92. 0%). Strain Gsoil 142T was a Gram-negative, strictly aerobic, motile, and rod-shaped bacterium. The G+C content of the genomic DNA was 69. 9% and predominant ubiquinone was Q-8. Major fatty acids were summed feature 8 (C18:1ω7c and/or ω6c, 36. 3%), summed feature 3 (iso-C15:0 2-OH and/or C16:1ω7c, 20. 6%) and C16:0 (17. 4%). The major polar lipids detected in strain Gsoil 142T were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unknown glycolipid. On the basis of polyphasic evidence, it is proposed that strain Gsoil 142T should be placed in a novel genus and species, for which the name Panacagrimonas perspica gen. nov., sp. nov. is proposed. The type strain is Gsoil 142T (= KCTC 12982T = LMG 23239T).

AB - A taxonomic study was carried out on Gsoil 142T, a bacterial strain isolated from the soil collected in a ginseng field in Pocheon province, South Korea. Comparative 16S rRNA gene sequence studies showed a clear affiliation of this bacterium to the Gammaproteobacteria, and it was most closely related to Hydrocarboniphaga effusa ATCC BAA 332T (94. 4%, 16S rRNA gene sequence similarity), Nevskia ramosa DSM 11499T (94. 1%) and Alkanibacter difficilis MN154. 3T (92. 0%). Strain Gsoil 142T was a Gram-negative, strictly aerobic, motile, and rod-shaped bacterium. The G+C content of the genomic DNA was 69. 9% and predominant ubiquinone was Q-8. Major fatty acids were summed feature 8 (C18:1ω7c and/or ω6c, 36. 3%), summed feature 3 (iso-C15:0 2-OH and/or C16:1ω7c, 20. 6%) and C16:0 (17. 4%). The major polar lipids detected in strain Gsoil 142T were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unknown glycolipid. On the basis of polyphasic evidence, it is proposed that strain Gsoil 142T should be placed in a novel genus and species, for which the name Panacagrimonas perspica gen. nov., sp. nov. is proposed. The type strain is Gsoil 142T (= KCTC 12982T = LMG 23239T).

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KW - Polyphasic taxonomy

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Panacagrimonas perspica gen. nov., sp. nov., a novel member of Gammaproteobacteria isolated from soil of a ginseng field

Abstract

Bibliographical note

Keywords

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